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I initially kept my list of papers (mostly academic) organized in http://delicious.com/ as a set of links and in bibtex so that I can refer to them. But this approach has many shortcomings, not the least of which is the difficulty of maintaining it. I then switched over to using a personal Mediawiki instance to manage it: this has the benefit of storing the paper and any meta-data about it. But this is also slightly painful to maintain.

I recently was introduced to the following:

Does anyone have experience using any of these services to manage your papers? Any recommendations?

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7 Answers 7

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Mendeley is excellent: I use it to manage a collection of several hundred PDFs. Favorite features include its automatic renaming of files, in-line highlighting and note-taking, automatic lookup of paper metadata via Google Scholar, and great support for OpenOffice, Word, and BibTex. Its search capability is also very good. And, it's well-integrated with the Mendeley website, where you can make a collection of papers a public folder to share with colleagues. Finally, it's cross-platform, which is vital to me as a Linux user.

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+1 I just downloaded it on your recommendation and although I've only had about 10 minutes' exposure, it looks excellent. Certainly a lot more appealing than Zotero ever was for me. –  David Z Jul 9 '10 at 3:46

I have not used any of those. Have you looked into http://www.Evernote.com? I don't know if it will do what you want but it will allow you to save and index many documents. It even OCRs text.

So for example you can take a picture of a menu or a specimen and upload it and it will automatically OCR whatever text is in the image. You can then search for words in the image and they will be returned. It will also return results for any documents that contain the word you search for.

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Evernote is definitely the answer to this one. –  Matt Jul 7 '10 at 19:51
    
Cool, that is what I thought as well. It really does everything. One thing to note, give it a little time! Evernote can do a lot for you and some of it is subtle. –  RandomBen Jul 7 '10 at 19:56
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Actually, mendeley is probably better suited for this situation, but that's what the answers and upvotes are for. I'm shocked that the comment affirming the answer has the same number of votes as the answer. –  klochner Jul 7 '10 at 21:03
    
Evernote is awesome but it is not the solution he is looking for. –  Daveyjoe Jul 8 '10 at 16:21

Papers is great, although I think the (upcoming?) next version will include a lot of features that makes it more of a topic-agnostic research article organizer. One thing that it (and Zotero) do that Evernote doesn't is pull in bibliographic information automatically, and then allows you to search/sort based on metadata fields.

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Bibdex is a webapp worth checking out. It seems to be aimed at collaborative research. I have not used it myself.

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I know this area very well, Evernote is not the answer. The three examples that you've listed: Papers, Zotero and Mendeley are much more appropriate. My tool of choice is Papers on the Mac and I use Dropbox for online access and back-up.

Some other options that you haven't mentioned are:

For online content and webpages (not PDFs), Diigo is really amazing, I swear by it.

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+1 Thanks for the additional resources. Papers does look very good. –  Shane Jul 8 '10 at 1:57

I have used Zotero and think it is great.

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I would vote for Evernote as well. Syncs great with your smartphone so that you always have your docs with you. Use that with Dropbox and I think you have the perfect solution.

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