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This blog post has a solution: http://blog.coudert.name/post/2014/11/26/Author-produced-PDF-from-LaTeX-on-the-arXiv For those looking for the quick fix, go to terminal and execute: sed -e '/PTEX\./s/./ /g' < submitted.pdf > arXiv.pdf If on OS X, run these first: export LC_CTYPE=C export LANG=C



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